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| 7. |  | ARRUDA, P. M.; SOUSA, L. P. de; WENDLING, I.; ROSA, L. S. da; SOUZA JUNIOR, L. Avaliação do grau de germinação de sementes e do crescimento de mudas de Mimosa scabrella Benthan em tubetes sob diferentes substratos. In: CONGRESSO FLORESTAL BRASILEIRO, 8., 2003, São Paulo. Benefícios, Produtos e Serviços da Floresta: Oportunidades e Desafios do Século XXI. São Paulo: Sociedade Brasileira de Silvicultura: Sociedade Brasileira de Engenheiros Florestais, 2003. CD-ROM. Resumo.| Biblioteca(s): Embrapa Florestas. |
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| 9. | | GERHARDT, I. R.; OKURA, V. K.; DANTE, R. A.; ARRUDA, P. A gene expression atlas of Vellozia nivea, a desiccation-tolerant species from the Brazilian campos rupestres. In: INTERNATIONAL PLANT & ANIMAL GENOME, 28., 2020, San Diego. Abstracts... Livingston, NJ: Scherago International, 2020. PE1028.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 10. | | COSTA, K. P. C. da; ARRUDA, P. A. P. de; AMANCIO, C. O. da G. Mapeamento socioeconômico do pescador profissional artesanal do Pantanal: o caso da Barra do São Lourenço, Corumbá, MS. In: ENCONTRO DE INICIAÇÃO CIENTÍFICA DA EMBRAPA PANTANAL E UNIVERSIDADE FEDERAL DE MATO GROSSO DO SUL, 3., SEMANA DE BIOLOGIA, 8. 2009, Corumbá. Resumos...Corumbá: Embrapa Pantanal, 2009. (Embrapa Pantanal. Documentos, 101). p. 37| Biblioteca(s): Embrapa Pantanal. |
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| 11. | | ARRUDA, P. A. P. de; COSTA, K. P. C. da; AMANCIO, C. O. da G. Mapeamento socioeconômico do pescador profissional artesanal do Pantanal: a Comunidade do Castelo, Corumbá, MS. In: ENCONTRO DE INICIAÇÃO CIENTÍFICA DA EMBRAPA PANTANAL E UNIVERSIDADE FEDERAL DE MATO GROSSO DO SUL, 3., SEMANA DE BIOLOGIA, 8. 2009, Corumbá. Resumos...Corumbá: Embrapa Pantanal, 2009. (Embrapa Pantanal. Documentos, 101). p. 36| Biblioteca(s): Embrapa Pantanal. |
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| 14. | | ARRUDA, P. R. R.; SILVA, E.; COUTO, L.; GRIFFITH, J. J. Problematica ambiental da Bacia hidrografica do Ribeirao Sao Bartolomeu, Vicosa-MG. Revista Arvore, Vicosa, v.23, n.1, p.49-56, jan./mar. 1999.| Biblioteca(s): Embrapa Florestas. |
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| 15. | | VERCESI, A. E.; ALMEIDA, A. M.; JARMUSZKIEWICZ, W.; KHOMSI, H.; ARRUDA, P.; SLUSE, F. E. Regulation of respiratory energy dissipation during ripening of tomato fruit. Revista Brasileira de Fisiologia Vegetal, Brasilia, v.11, p.3, jul. 1999. Resumo. Suplemento.| Biblioteca(s): Embrapa Hortaliças. |
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| 16. | | AMANCIO, C. O. da G.; COSTA, K. P. C.; ARRUDA, P.; ZERLOTTI, P. Zoneamento socioeconômico da população ribeirinha do Pantanal: Comunidade do Castelo, Corumbá, MS. SIMPÓSIO SOBRE RECURSOS NATURAIS E SOCIOECONÔMICOS DO PANTANAL, 5., 2010, Corumbá, MS. Anais... Corumbá: Embrapa Pantanal: UFMS; Campinas: ICS do Brasil, 2010. 1 CD-ROM SIMPAN 2010. Não Paginado.| Biblioteca(s): Embrapa Pantanal. |
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| 17. | | COSTA, K. P. C da; AMANCIO, C. O. da G.; ARRUDA, P. A. P. de; AMÂNCIO, R.; GARCIA, M. H. Aspectos sociais, econômicos e culturais de uma comunidade ribeirinha no Pantanal Sul Mato-grossense: a Barra do São Lourenço, Corumbá, MS. In: CONGRESSO LATINOAMERICANO DE SOCIOLOGIA RURAL, 8., 2010, Porto de Galinhas. Anais... Pernambuco: UFRPE, 2010. 13 p.| Biblioteca(s): Embrapa Agrobiologia. |
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| 18. | | BARRETO, P.; KOLTUN, A.; NONATO, J.; YASSITEPE, J. E. de C. T.; MAIA, I. de G.; ARRUDA, P. Metabolism and signaling of plant mitochondria in adaptation to environmental stresses. International Journal of Molecular Sciences, v. 23, n. 19, 11176, 2022. Na publicação: Juliana Yassitepe.| Biblioteca(s): Embrapa Agricultura Digital. |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Agricultura Digital. Para informações adicionais entre em contato com cnptia.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
21/11/2012 |
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Data da última atualização: |
08/01/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 1 |
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Autoria: |
FIGUEIRA, T. R. e S.; OKURA, V.; SILVA, F. R. da; SILVA, M. J. da; KUDRNA, D.; AMMIRAJU, J. S. S.; TALAG, J.; WING, R.; ARRUDA, P. |
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Afiliação: |
THAIS REZENDE E SILVA FIGUEIRA, Unicamp; VAGNER OKURA, Unicamp; FELIPE RODRIGUES DA SILVA, CNPTIA; MARCIO JOSE DA SILVA, Unicamp; DAVE KUDRNA; JETTY S. S. AMMIRAJU; JAYSON TALAG; ROD WING; PAULO ARRUDA, Unicamp. |
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Título: |
A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
BMC Research Notes, v. 5, 2012. |
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Páginas: |
11 p. |
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DOI: |
10.1186/1756-0500-5-185 |
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Idioma: |
Inglês |
|
Conteúdo: |
Background: Sugarcane breeding has significantly progressed in the last 30 years, but achieving additional yield gains has been difficult because of the constraints imposed by the complex ploidy of this crop. Sugarcane cultivars are interspecific hybrids between Saccharum officinarum and Saccharum spontaneum. S. officinarum is an octoploid with 2n = 80 chromosomes while S. spontaneum has 2n = 40 to 128 chromosomes and ploidy varying from 5 to 16The hybrid genome is composed of 70-80% S. officinaram and 5-20% S. spontaneum chromosomes and a small proportion of recombinants. Sequencing the genome of this complex crop may help identify useful genes, either per se or through comparative genomics using closely related grasses. The construction and sequencing of a bacterial artificial chromosome (BAC) library of an elite commercial variety of sugarcane could help assembly the sugarcane genome. Results: A BAC library designated SS_SBa was constructed with DNA isolated from the commercial sugarcane variety SP80-3280. The library contains 36,864 clones with an average insert size of 125 Kb, 88% of which has inserts larger than 90 Kb. Based on the estimated genome size of 760?930 Mb, the library exhibits 5?6 times coverage the monoploid sugarcane genome. Bidirectional BAC end sequencing (BESs) from a random sample of 192 BAC clones sampled genes and repetitive elements of the sugarcane genome. Forty-five per cent of the total BES nucleotides represents repetitive elements, 83% of which belonging to LTR retrotransposons. Alignment of BESs corresponding to 42 BACs to the genome sequence of the 10 sorghum chromosomes revealed regions of microsynteny, with expansions and contractions of sorghum genome regions relative to the sugarcane BAC clones. In general, the sampled sorghum genome regions presented an average 29% expansion in relation to the sugarcane syntenic BACs. Conclusion: The SS_SBa BAC library represents a new resource for sugarcane genome sequencing. An analysis of insert size, genome coverage and orthologous alignment with the sorghum genome revealed that the library presents whole genome coverage. The comparison of syntenic regions of the sorghum genome to 42 SS_SBa BES pairs revealed that the sorghum genome is expanded in relation to the sugarcane genome. MenosBackground: Sugarcane breeding has significantly progressed in the last 30 years, but achieving additional yield gains has been difficult because of the constraints imposed by the complex ploidy of this crop. Sugarcane cultivars are interspecific hybrids between Saccharum officinarum and Saccharum spontaneum. S. officinarum is an octoploid with 2n = 80 chromosomes while S. spontaneum has 2n = 40 to 128 chromosomes and ploidy varying from 5 to 16The hybrid genome is composed of 70-80% S. officinaram and 5-20% S. spontaneum chromosomes and a small proportion of recombinants. Sequencing the genome of this complex crop may help identify useful genes, either per se or through comparative genomics using closely related grasses. The construction and sequencing of a bacterial artificial chromosome (BAC) library of an elite commercial variety of sugarcane could help assembly the sugarcane genome. Results: A BAC library designated SS_SBa was constructed with DNA isolated from the commercial sugarcane variety SP80-3280. The library contains 36,864 clones with an average insert size of 125 Kb, 88% of which has inserts larger than 90 Kb. Based on the estimated genome size of 760?930 Mb, the library exhibits 5?6 times coverage the monoploid sugarcane genome. Bidirectional BAC end sequencing (BESs) from a random sample of 192 BAC clones sampled genes and repetitive elements of the sugarcane genome. Forty-five per cent of the total BES nucleotides represents repetitive elements, 83% of whic... Mostrar Tudo |
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Palavras-Chave: |
Genoma da cana-de-açúcar. |
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Thesagro: |
Sorgo. |
|
Thesaurus NAL: |
Genome; Saccharum; Sugarcane. |
|
Categoria do assunto: |
-- |
|
Marc: |
LEADER 03137naa a2200301 a 4500
001 1940142
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024 7 $a10.1186/1756-0500-5-185$2DOI
100 1 $aFIGUEIRA, T. R. e S.
245 $aA BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.$h[electronic resource]
260 $c2012
300 $a11 p.
520 $aBackground: Sugarcane breeding has significantly progressed in the last 30 years, but achieving additional yield gains has been difficult because of the constraints imposed by the complex ploidy of this crop. Sugarcane cultivars are interspecific hybrids between Saccharum officinarum and Saccharum spontaneum. S. officinarum is an octoploid with 2n = 80 chromosomes while S. spontaneum has 2n = 40 to 128 chromosomes and ploidy varying from 5 to 16The hybrid genome is composed of 70-80% S. officinaram and 5-20% S. spontaneum chromosomes and a small proportion of recombinants. Sequencing the genome of this complex crop may help identify useful genes, either per se or through comparative genomics using closely related grasses. The construction and sequencing of a bacterial artificial chromosome (BAC) library of an elite commercial variety of sugarcane could help assembly the sugarcane genome. Results: A BAC library designated SS_SBa was constructed with DNA isolated from the commercial sugarcane variety SP80-3280. The library contains 36,864 clones with an average insert size of 125 Kb, 88% of which has inserts larger than 90 Kb. Based on the estimated genome size of 760?930 Mb, the library exhibits 5?6 times coverage the monoploid sugarcane genome. Bidirectional BAC end sequencing (BESs) from a random sample of 192 BAC clones sampled genes and repetitive elements of the sugarcane genome. Forty-five per cent of the total BES nucleotides represents repetitive elements, 83% of which belonging to LTR retrotransposons. Alignment of BESs corresponding to 42 BACs to the genome sequence of the 10 sorghum chromosomes revealed regions of microsynteny, with expansions and contractions of sorghum genome regions relative to the sugarcane BAC clones. In general, the sampled sorghum genome regions presented an average 29% expansion in relation to the sugarcane syntenic BACs. Conclusion: The SS_SBa BAC library represents a new resource for sugarcane genome sequencing. An analysis of insert size, genome coverage and orthologous alignment with the sorghum genome revealed that the library presents whole genome coverage. The comparison of syntenic regions of the sorghum genome to 42 SS_SBa BES pairs revealed that the sorghum genome is expanded in relation to the sugarcane genome.
650 $aGenome
650 $aSaccharum
650 $aSugarcane
650 $aSorgo
653 $aGenoma da cana-de-açúcar
700 1 $aOKURA, V.
700 1 $aSILVA, F. R. da
700 1 $aSILVA, M. J. da
700 1 $aKUDRNA, D.
700 1 $aAMMIRAJU, J. S. S.
700 1 $aTALAG, J.
700 1 $aWING, R.
700 1 $aARRUDA, P.
773 $tBMC Research Notes$gv. 5, 2012.
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